Basic Information
Locus ID:
AH06.2827
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 45378971 | 45380167 | + | AH06.2827 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.23 | 41,275.23 Da | 71.95 | 70.91 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 120 | 163 | 2.26759E-17 | - |
| Pfam | PF13639 | Ring finger domain | 120 | 163 | 1.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 115 | 168 | 4.8E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 95 | 170 | 9.5E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 121 | 162 | 1.7E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 121 | 163 | 12.179465 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 364 | 398 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 238 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05810.1 | RING/U-box superfamily protein. | 4.58E-71 |
| RefSeq | XP_034589250.1 | RING-H2 finger protein ATL43-like [Setaria viridis] | 2.34E-241 |
| Q5EAE9 | RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2 | 4.43E-70 | |
| TrEMBL | A0A4U6V7F6 | RING-type domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_4G259101v2 PE=4 SV=1 | 5.28E-240 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology