Basic Information
Locus ID:
AH06.271
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Transferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 2507412 | 2510551 | - | AH06.271 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.24 | 65,364.91 Da | 43.29 | 91.39 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01803 | Ubl_ubiquitin | 490 | 565 | 1.49247E-52 | - |
| Pfam | PF00240 | Ubiquitin family | 492 | 563 | 2.4E-30 | IPR000626 |
| Pfam | PF02458 | Transferase family | 8 | 425 | 2.9E-42 | IPR003480 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 489 | 565 | 2.25E-31 | IPR029071 |
| Gene3D | G3DSA:3.30.559.10 | - | 4 | 208 | 9.2E-34 | IPR023213 |
| Gene3D | G3DSA:3.30.559.10 | - | 212 | 433 | 1.6E-31 | IPR023213 |
| Gene3D | G3DSA:3.10.20.90 | - | 485 | 576 | 2.7E-43 | - |
| SMART | SM00213 | ubq_7 | 490 | 561 | 8.3E-32 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 490 | 565 | 28.056812 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 521 | 541 | 9.5E-36 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 542 | 563 | 9.5E-36 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 500 | 520 | 9.5E-36 | IPR019956 |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31490.1 | HXXXD-type acyl-transferase family protein. | 3.27E-59 |
| RefSeq | XP_034590393.1 | putrescine hydroxycinnamoyltransferase 1-like [Setaria viridis] | 2.86E-287 |
| P69310 | Ubiquitin OS=Avena sativa OX=4498 PE=1 SV=1 | 2.65E-39 | |
| TrEMBL | A0A4U6UUA6 | HXXXD-type acyl-transferase family protein OS=Setaria viridis OX=4556 GN=SEVIR_4G071100v2 PE=3 SV=1 | 6.47E-286 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg7742 |
| Arecaceae | Cocos nucifera | 3 | scaffold006710G000010, scaffold006710G000040 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103714808, gene-LOC103720449, gene-LOC120107650 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.1338.V1.1, AsparagusV1_01.3161.V1.1 ... |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G31490.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10009746m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g27290.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g047350.2N |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.476 |
| Poaceae | Echinochloa crus-galli | 32 | AH01.2199, AH01.2329, AH02.939, AH02.941, AH02.942, AH06.269 ... |
| Poaceae | Eleusine coracana subsp. coracana | 19 | gene-QOZ80_1AG0004780, gene-QOZ80_1AG0004790 ... |
| Poaceae | Hordeum vulgare | 10 | HORVU.MOREX.r3.4HG0415600.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 7 | gene-QYE76_014082, gene-QYE76_027938, gene-QYE76_027941 ... |
| Poaceae | Oryza coarctata | 9 | Oco01G007070, Oco01G007080, Oco03G008200, Oco11G002380 ... |
| Poaceae | Oryza sativa | 10 | LOC_Os01g15680.2, LOC_Os01g15709.1, LOC_Os01g15740.1 ... |
| Poaceae | Paspalum vaginatum | 6 | gene-BS78_03G108700, gene-BS78_03G108800, gene-BS78_K079000 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0402172, Pt_Chr0402185, Pt_Chr0704749 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr05G004190, Chr05G004200, Chr0G015570, Chr0G015580 ... |
| Poaceae | Thinopyrum elongatum | 15 | Tel1E01G022800, Tel1E01G022900, Tel1E01G023000 ... |
| Poaceae | Triticum dicoccoides | 11 | gene_TRIDC1BG001980, gene_TRIDC1BG002150 ... |
| Poaceae | Triticum aestivum | 32 | TraesCS1B02G014300.1.cds1, TraesCS1B02G016500.1.cds1 ... |
| Poaceae | Zea mays | 6 | Zm00001eb313470_P001, Zm00001eb316330_P001 ... |
| Poaceae | Zoysia japonica | 9 | nbis-gene-14737, nbis-gene-40415, nbis-gene-40416 ... |
| Poaceae | Zoysia macrostachya | 7 | Zma_g29115, Zma_g29116, Zma_g702, Zma_g703, Zma_g9718 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.663 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24821 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18523 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19070 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16841 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10439 |
| Salicaceae | Populus euphratica | 1 | populus_peu03322 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132637570 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16129 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0558 |