Basic Information
Locus ID:
AH06.2690
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 44168770 | 44171991 | + | AH06.2690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 52,713.93 Da | 53.60 | 86.43 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 239 | 287 | 5.06105E-16 | - |
| Pfam | PF12906 | RING-variant domain | 239 | 286 | 3.4E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 235 | 290 | 2.05E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 227 | 294 | 3.3E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 238 | 287 | 3.6E-18 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 231 | 293 | 19.450621 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 140 | 171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 449 | 482 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 83 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 2.06E-106 |
| RefSeq | XP_025813387.1 | uncharacterized protein LOC112890751 isoform X2 [Panicum hallii] | 2.41E-292 |
| TrEMBL | A0A3L6RYY3 | RING-CH-type domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM09G21560 PE=4 SV=1 | 6.97E-294 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology