Basic Information
Locus ID:
AH06.2633
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
K-box region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 43594392 | 43596701 | + | AH06.2633 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.61 | 43,019.31 Da | 54.35 | 90.13 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 12 | 43 | 1.5E-8 | IPR002100 |
| Pfam | PF13639 | Ring finger domain | 212 | 256 | 2.7E-6 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 206 | 264 | 2.21E-11 | - |
| SUPERFAMILY | SSF55455 | SRF-like | 4 | 51 | 2.09E-10 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 10 | 70 | 6.3E-8 | IPR036879 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 171 | 260 | 3.4E-12 | IPR013083 |
| SMART | SM00432 | madsneu2 | 1 | 47 | 1.8E-7 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 7 | 48 | 10.694247 | IPR002100 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 213 | 256 | 9.30263 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G35625.1 | RING/U-box superfamily protein. | 3.73E-8 |
| RefSeq | XP_022681969.1 | MADS-box transcription factor 30 [Setaria italica] | 3.59E-13 |
| F4HZZ4 | Receptor homology region, transmembrane domain- and RING domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=RMR6 PE=3 SV=2 | 3.69E-7 | |
| TrEMBL | A0A368QYM7 | MADS-box domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_4G268200v2 PE=4 SV=1 | 4.16E-11 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||