Basic Information
Locus ID:
AH06.2609
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
K-box region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 43358371 | 43369170 | + | AH06.2609 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.49 | 65,144.70 Da | 61.79 | 82.67 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 2 | 79 | 3.10361E-35 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 1.8E-24 | IPR002100 |
| Pfam | PF00808 | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 445 | 478 | 4.5E-6 | IPR003958 |
| Pfam | PF01486 | K-box region | 85 | 158 | 1.2E-18 | IPR002487 |
| SUPERFAMILY | SSF47113 | Histone-fold | 436 | 478 | 5.95E-8 | IPR009072 |
| SUPERFAMILY | SSF55455 | SRF-like | 2 | 83 | 1.01E-28 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 87 | 2.1E-23 | IPR036879 |
| Gene3D | G3DSA:1.10.20.10 | Histone, subunit A | 436 | 484 | 3.4E-12 | IPR009072 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 1.3E-36 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 88 | 173 | 13.277538 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 30.136936 | IPR002100 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 1.5E-26 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 1.5E-26 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 1.5E-26 | IPR002100 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 304 | - | - |
| Coils | Coil | Coil | 88 | 115 | - | - |
| Coils | Coil | Coil | 119 | 150 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69120.2 | - | 1.16E-35 |
| RefSeq | XP_025811394.1 | MADS-box transcription factor 30-like [Panicum hallii] | 4.56E-108 |
| Q655V4 | MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS30 PE=2 SV=1 | 1.43E-48 | |
| TrEMBL | A0A2T7DVG8 | MADS-box domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_4G053400 PE=4 SV=1 | 4.14E-108 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH06.2609, BH06.2403, CH06.2690 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_10G221100, gene-BS78_10G221400 |
| Poaceae | Zea mays | 1 | Zm00001eb274330_P001 |