Basic Information
Locus ID:
AH06.2601
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 43299409 | 43302733 | - | AH06.2601 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.01 | 22,678.93 Da | 54.00 | 87.75 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 157 | 198 | 3.3E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 157 | 199 | 9.66E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 200 | 5.6E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 155 | 197 | 0.0069 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 157 | 198 | 11.058237 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_012084713.1 | E3 ubiquitin-protein ligase RNF181 [Jatropha curcas] | 4.4E-8 |
| TrEMBL | K7W1J0 | Putative RING zinc finger domain superfamily protein OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d011883 PE=4 SV=1 | 9.98E-12 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for AH06.2601.