Basic Information
Locus ID:
AH06.2567
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the SKP1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 43007012 | 43007575 | + | AH06.2567 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.67 | 19,969.18 Da | 46.39 | 76.84 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18322 | BTB_POZ_SKP1 | 17 | 152 | 5.10457E-37 | - |
| Pfam | PF03931 | Skp1 family, tetramerisation domain | 17 | 79 | 1.1E-15 | IPR016073 |
| Pfam | PF01466 | Skp1 family, dimerisation domain | 139 | 184 | 5.4E-27 | IPR016072 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 111 | 185 | 1.05E-27 | IPR036296 |
| SUPERFAMILY | SSF54695 | POZ domain | 16 | 82 | 7.22E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 11 | 187 | 1.0E-57 | IPR011333 |
| SMART | SM00512 | skp1_3 | 15 | 137 | 2.1E-22 | IPR001232 |
| PIRSF | PIRSF028729 | SCF_Skp | 1 | 187 | 7.1E-56 | IPR016897 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42190.1 | E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein. Similar to SKP1 in yeast and humans which are involved in mitotic cell cycle control and ubiquitin mediated proteolysis. | 7.32E-45 |
| RefSeq | XP_034589450.1 | SKP1-like protein 1 [Setaria viridis] | 1.87E-70 |
| Q6PL11 | SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1 | 2.02E-46 | |
| TrEMBL | A0A4U6UZ15 | SKP1-like protein OS=Setaria viridis OX=4556 GN=SEVIR_4G155600v2 PE=3 SV=1 | 4.23E-69 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||