Basic Information
Locus ID:
AH06.2525
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
DNA-binding domain in plant proteins such as APETALA2 and EREBPs
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 42614894 | 42622885 | + | AH06.2525 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.11 | 159,244.64 Da | 52.34 | 62.06 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00018 | AP2 | 1100 | 1169 | 9.15651E-22 | IPR001471 |
| CDD | cd00018 | AP2 | 1202 | 1263 | 5.36218E-24 | IPR001471 |
| Pfam | PF00847 | AP2 domain | 1203 | 1253 | 1.2E-9 | IPR001471 |
| Pfam | PF02902 | Ulp1 protease family, C-terminal catalytic domain | 835 | 892 | 6.1E-5 | IPR003653 |
| Pfam | PF00847 | AP2 domain | 1101 | 1159 | 1.4E-12 | IPR001471 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 741 | 907 | 1.96E-19 | IPR038765 |
| SUPERFAMILY | SSF54171 | DNA-binding domain | 1202 | 1263 | 2.75E-17 | IPR016177 |
| SUPERFAMILY | SSF54171 | DNA-binding domain | 1100 | 1169 | 5.1E-17 | IPR016177 |
| Gene3D | G3DSA:3.30.730.10 | AP2/ERF domain | 1101 | 1169 | 2.2E-27 | IPR036955 |
| Gene3D | G3DSA:3.30.730.10 | AP2/ERF domain | 1203 | 1263 | 9.8E-22 | IPR036955 |
| Gene3D | G3DSA:3.40.395.10 | Adenoviral Proteinase; Chain A | 725 | 914 | 1.5E-9 | - |
| SMART | SM00380 | rav1_2 | 1101 | 1173 | 4.6E-30 | IPR001471 |
| SMART | SM00380 | rav1_2 | 1203 | 1267 | 1.5E-33 | IPR001471 |
| ProSiteProfiles | PS51032 | AP2/ERF domain profile. | 1203 | 1261 | 19.045208 | IPR001471 |
| ProSiteProfiles | PS51032 | AP2/ERF domain profile. | 1101 | 1167 | 19.22967 | IPR001471 |
| PRINTS | PR00367 | Ethylene responsive element binding protein signature | 1243 | 1263 | 1.4E-5 | IPR001471 |
| PRINTS | PR00367 | Ethylene responsive element binding protein signature | 1102 | 1113 | 1.4E-5 | IPR001471 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 659 | 692 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 582 | 626 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 387 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 948 | 966 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 946 | 966 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 517 | 626 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 563 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 389 | - | - |
| Coils | Coil | Coil | 317 | 351 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57390.2 | - | 4.03E-113 |
| RefSeq | XP_025812430.1 | AP2-like ethylene-responsive transcription factor AIL5 [Panicum hallii] | 1.72E-279 |
| Q5YGP7 | AP2-like ethylene-responsive transcription factor PLT2 OS=Arabidopsis thaliana OX=3702 GN=PLT2 PE=2 SV=1 | 5.5E-111 | |
| TrEMBL | A0A2T7DVS9 | AP2-like ethylene-responsive transcription factor AIL5 OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_4G061600 PE=4 SV=1 | 7.7E-281 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 46 | AH01.2619, AH01.3243, AH02.2591, AH02.744, AH03.1151 ... |
| Poaceae | Lolium multiflorum | 13 | gene-QYE76_005385, gene-QYE76_005912, gene-QYE76_006405 ... |