Basic Information
Locus ID:
AH06.2505
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 42382440 | 42390324 | - | AH06.2505 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 120,043.34 Da | 53.74 | 69.60 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 188 | 494 | 1.99945E-161 | - |
| Pfam | PF00584 | SecE/Sec61-gamma subunits of protein translocation complex | 1042 | 1094 | 6.7E-12 | IPR001901 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 189 | 493 | 6.2E-43 | IPR001394 |
| Pfam | PF01753 | MYND finger | 92 | 129 | 3.3E-9 | IPR002893 |
| SUPERFAMILY | SSF103456 | Preprotein translocase SecE subunit | 1034 | 1094 | 2.88E-11 | IPR023391 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 188 | 495 | 2.16E-86 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 89 | 132 | 6.1E-12 | - |
| Gene3D | G3DSA:1.20.5.820 | Preprotein translocase SecE subunit | 1036 | 1097 | 1.4E-29 | IPR023391 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 187 | 502 | 4.4E-91 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 83 | 135 | 1.3E-13 | - |
| TIGRFAM | TIGR00327 | secE_euk_arch: protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic | 1037 | 1095 | 2.7E-14 | IPR008158 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 92 | 129 | 12.492804 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 189 | 496 | 49.230114 | IPR028889 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 92 | 129 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 190 | 205 | - | IPR018200 |
| ProSitePatterns | PS01067 | Protein secE/sec61-gamma signature. | 1043 | 1071 | - | IPR001901 |
| Hamap | MF_00422 | Protein translocase subunit SecE [secE]. | 1038 | 1093 | 12.722815 | IPR001901 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 877 | 901 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 975 | 1001 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 938 | 957 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 885 | 901 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 536 | 555 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 7.77E-179 |
| RefSeq | XP_004965693.1 | ubiquitin carboxyl-terminal hydrolase 19 [Setaria italica] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 7.49E-178 | |
| TrEMBL | A0A3L6RWJ1 | Ubiquitin carboxyl-terminal hydrolase 19-like OS=Panicum miliaceum OX=4540 GN=C2845_PM09G20380 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology