Basic Information
Locus ID:
AH06.246
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 2278172 | 2281717 | - | AH06.246 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.75 | 28,753.04 Da | 64.90 | 68.67 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 154 | 235 | 1.99224E-30 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 156 | 226 | 1.2E-11 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 147 | 227 | 1.61E-13 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 148 | 240 | 1.4E-18 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 155 | 232 | 1.5E-8 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 154 | 240 | 11.826953 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21320.5 | - | 4.87E-29 |
| RefSeq | XP_004964565.1 | RNA-binding protein 1 isoform X4 [Setaria italica] | 9.72E-127 |
| Q8H0P8 | RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1 | 1.83E-30 | |
| TrEMBL | K3XYX4 | RRM domain-containing protein OS=Setaria italica OX=4555 GN=101774592 PE=4 SV=1 | 2.2E-125 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology