Basic Information
Locus ID:
AH06.2242
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
EBF1
Description:
Leucine Rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 39295779 | 39298873 | + | AH06.2242 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.32 | 69,953.08 Da | 43.77 | 99.25 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 238 | 260 | 0.019 | IPR001611 |
| SUPERFAMILY | SSF81383 | F-box domain | 78 | 119 | 1.83E-6 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 205 | 661 | 4.55E-40 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 470 | 665 | 1.3E-33 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 188 | 276 | 6.1E-22 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 277 | 469 | 7.2E-27 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 528 | 553 | 5.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 395 | 420 | 27.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 501 | 526 | 0.92 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 237 | 262 | 2.8E-7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 581 | 605 | 8.5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 211 | 236 | 0.13 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 182 | 210 | 240.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 555 | 580 | 0.0021 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 607 | 632 | 300.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 369 | 394 | 39.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 475 | 500 | 4.7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 263 | 288 | 1.2 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 289 | 314 | 2.5 | IPR006553 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 83 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25490.1 | EIN3-binding F box protein 1. Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3. | 9.98E-89 |
| RefSeq | XP_004965933.1 | EIN3-binding F-box protein 1 [Setaria italica] | 6.24E-272 |
| Q9SKK0 | EIN3-binding F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EBF1 PE=1 SV=1 | 9.68E-88 | |
| TrEMBL | A0A835AM79 | F-box domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_058790 PE=4 SV=1 | 1.33E-290 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology