Basic Information
Locus ID:
AH06.2178
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Kelch motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 38328113 | 38329228 | + | AH06.2178 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 39,297.95 Da | 56.07 | 75.85 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 164 | 209 | 1.1E-12 | IPR006652 |
| Pfam | PF00646 | F-box domain | 6 | 46 | 4.7E-4 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 126 | 161 | 5.3E-6 | IPR006652 |
| SUPERFAMILY | SSF117281 | Kelch motif | 83 | 333 | 1.96E-41 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 77 | 363 | 1.4E-39 | IPR015915 |
| SMART | SM00612 | kelc_smart | 176 | 223 | 1.4E-4 | IPR006652 |
| SMART | SM00612 | kelc_smart | 126 | 175 | 6.1E-7 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80440.1 | Galactose oxidase/kelch repeat superfamily protein. | 3.15E-69 |
| RefSeq | XP_012700569.1 | LOW QUALITY PROTEIN: F-box/kelch-repeat protein At1g80440-like [Setaria italica] | 2.18E-238 |
| Q9M8L2 | F-box/kelch-repeat protein At1g80440 OS=Arabidopsis thaliana OX=3702 GN=At1g80440 PE=2 SV=1 | 3.04E-68 | |
| TrEMBL | A0A4U6V0M0 | F-box domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_4G238100v2 PE=4 SV=1 | 8.17E-236 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology