Basic Information
Locus ID:
AH06.213
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 1938373 | 1939167 | + | AH06.213 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.05 | 28,421.71 Da | 73.41 | 41.17 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 191 | 230 | 2.0E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 186 | 229 | 1.03E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 172 | 231 | 1.3E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 192 | 231 | 2.7E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 192 | 229 | 10.291081 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 86 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039806486.1 | E3 ubiquitin-protein ligase Os06g0535400-like [Panicum virgatum] | 4.99E-17 |
| TrEMBL | K3Y383 | RING-type domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1 | 2.01E-34 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH06.213, BH06.316 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G036000 |