Basic Information
Locus ID:
AH06.2104
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
flocculation via cell wall protein-carbohydrate interaction
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 37034607 | 37045963 | + | AH06.2104 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 165,083.92 Da | 66.95 | 70.61 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02902 | Ulp1 protease family, C-terminal catalytic domain | 1166 | 1212 | 8.2E-5 | IPR003653 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 1071 | 1214 | 2.75E-17 | IPR038765 |
| Gene3D | G3DSA:3.40.395.10 | Adenoviral Proteinase; Chain A | 1057 | 1284 | 1.2E-8 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1341 | 1358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 124 | 193 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 671 | 693 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1337 | 1376 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1454 | 1476 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 888 | 936 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 967 | 1000 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 848 | 869 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 350 | 370 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 671 | 695 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 350 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 823 | 940 | - | - |
| Coils | Coil | Coil | 623 | 657 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051178465.1 | uncharacterized protein LOC127292954 [Lolium perenne] | 6.79E-72 |
| TrEMBL | B8BAR1 | ULP_PROTEASE domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_29206 PE=3 SV=1 | 3.22E-175 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 46 | AH01.2619, AH01.3243, AH02.2591, AH02.744, AH03.1151 ... |
| Poaceae | Lolium multiflorum | 13 | gene-QYE76_005385, gene-QYE76_005912, gene-QYE76_006405 ... |