Basic Information
Locus ID:
AH06.2013
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Poly(A) polymerase central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 35445170 | 35453469 | - | AH06.2013 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.05 | 102,132.38 Da | 52.31 | 74.64 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 51 | 206 | 1.44489E-29 | - |
| Pfam | PF04928 | Poly(A) polymerase central domain | 12 | 356 | 2.7E-109 | IPR007012 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 85 | 159 | 1.0E-7 | IPR002934 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 419 | 492 | 1.5E-5 | IPR007010 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 358 | 418 | 1.1E-11 | IPR007010 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 357 | 484 | 1.61E-37 | IPR011068 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 207 | 356 | 6.02E-65 | - |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 8 | 204 | 2.16E-49 | IPR043519 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 358 | 474 | 6.4E-27 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 44 | 200 | 2.8E-155 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 12 | 354 | 2.8E-155 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 596 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 804 | 819 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 543 | 591 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 537 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 793 | 819 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 1.62E-295 |
| RefSeq | XP_025810846.1 | nuclear poly(A) polymerase 4-like isoform X2 [Panicum hallii] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 3.79E-294 | |
| TrEMBL | A0A2T8JCP1 | polynucleotide adenylyltransferase OS=Panicum hallii OX=206008 GN=PAHAL_4G112100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology