Basic Information
Locus ID:
AH06.1894
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 33198611 | 33203774 | + | AH06.1894 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.07 | 51,638.29 Da | 94.40 | 62.80 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12678 | RING-H2 zinc finger domain | 410 | 451 | 3.1E-10 | IPR024766 |
| SUPERFAMILY | SSF57850 | RING/U-box | 413 | 456 | 1.7E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 398 | 454 | 5.8E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 414 | 450 | 0.0065 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 414 | 451 | 9.981268 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 260 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 243 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05810.1 | RING/U-box superfamily protein. | 1.89E-11 |
| RefSeq | XP_025813549.1 | RING-H2 finger protein ATL39-like [Panicum hallii] | 1.15E-38 |
| Q5EAE9 | RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2 | 1.88E-10 | |
| TrEMBL | A0A3L6RXC4 | RING-type domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM09G15170 PE=4 SV=1 | 2.92E-44 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||