Basic Information
Locus ID:
AH06.1890
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 33167930 | 33168424 | + | AH06.1890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.57 | 17,325.44 Da | 60.97 | 108.35 | 0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 100 | 143 | 9.5957E-16 | - |
| Pfam | PF13639 | Ring finger domain | 99 | 143 | 3.1E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 82 | 148 | 1.94E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 77 | 150 | 2.6E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 101 | 142 | 1.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 101 | 143 | 11.884405 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10160.1 | RING/U-box superfamily protein. | 1.33E-17 |
| RefSeq | XP_025813023.1 | RING-H2 finger protein ATL52-like [Panicum hallii] | 9.52E-88 |
| Q9SN27 | E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana OX=3702 GN=ATL59 PE=1 SV=1 | 1.3E-16 | |
| TrEMBL | A0A3L6PFS3 | RING-H2 finger protein ATL32-like OS=Panicum miliaceum OX=4540 GN=C2845_PM10G13640 PE=4 SV=1 | 1.3E-87 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH06.1890, BH06.1735 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0541980, gene-QOZ80_6BG0495190 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0709440.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_034091, gene-QYE76_042759 |
| Poaceae | Oryza coarctata | 3 | Oco03G006760, Oco04G007030, Oco11G010420 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g14990.1, LOC_Os06g34470.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_10G155300, gene-BS78_10G155400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0400153, Pt_Chr0400167 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr10G015750 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G571100 |
| Poaceae | Triticum aestivum | 5 | TraesCS7A02G347700.1, TraesCS7A02G563700.1 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10265, nbis-gene-10276 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30667, Zma_g30671 |