Basic Information
Locus ID:
AH06.1883
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 32953603 | 32954280 | + | AH06.1883 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.16 | 23,267.54 Da | 59.84 | 109.47 | 0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 151 | 193 | 4.30641E-18 | - |
| Pfam | PF13639 | Ring finger domain | 151 | 193 | 2.1E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 147 | 199 | 2.12E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 123 | 199 | 6.9E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 151 | 192 | 7.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 151 | 193 | 11.913911 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66070.1 | RING/U-box superfamily protein. | 2.8E-14 |
| RefSeq | XP_025813027.1 | probable E3 ubiquitin-protein ligase ATL45 [Panicum hallii] | 1.2E-91 |
| Q9FKX5 | NEP1-interacting protein-like 1 OS=Arabidopsis thaliana OX=3702 GN=ATL27 PE=2 SV=1 | 2.74E-13 | |
| TrEMBL | A0A3L6S2G1 | Zinc finger, C3HC4 type family protein OS=Panicum miliaceum OX=4540 GN=C2845_PM09G15090 PE=4 SV=1 | 4.66E-94 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology