Basic Information
Locus ID:
AH06.17
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 215506 | 217596 | + | AH06.17 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.19 | 64,784.89 Da | 39.71 | 98.85 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 228 | 270 | 2.27188E-27 | - |
| Pfam | PF04564 | U-box domain | 224 | 294 | 8.2E-24 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 433 | 471 | 7.9E-9 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 514 | 553 | 3.9E-4 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 351 | 389 | 8.2E-11 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 223 | 299 | 2.59E-31 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 319 | 594 | 2.88E-50 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 320 | 595 | 4.5E-55 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 224 | 297 | 2.6E-32 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 227 | 290 | 1.6E-35 | IPR003613 |
| SMART | SM00185 | arm_5 | 432 | 472 | 0.011 | IPR000225 |
| SMART | SM00185 | arm_5 | 514 | 554 | 5.6 | IPR000225 |
| SMART | SM00185 | arm_5 | 473 | 513 | 79.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 391 | 431 | 3.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 350 | 390 | 1.4E-6 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 223 | 297 | 45.778263 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 361 | 403 | 13.2824 | IPR000225 |
| Coils | Coil | Coil | 580 | 600 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 1.94E-157 |
| RefSeq | XP_025811509.1 | U-box domain-containing protein 12 [Panicum hallii] | 1.55E-310 |
| Q5VRH9 | U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB12 PE=1 SV=1 | 5.65E-261 | |
| TrEMBL | A0A2T7E463 | RING-type E3 ubiquitin transferase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_4G370900 PE=4 SV=1 | 3.51E-309 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology