Basic Information
Locus ID:
AH06.16
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 205670 | 214114 | + | AH06.16 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.58 | 105,969.41 Da | 54.74 | 80.38 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 367 | 420 | 3.2E-15 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 549 | 600 | 5.7E-16 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 607 | 660 | 6.58E-12 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 697 | 758 | 6.87E-9 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 861 | 950 | 6.16E-7 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 601 | 692 | 4.4E-14 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 699 | 762 | 3.8E-12 | IPR013083 |
| SMART | SM00249 | PHD_3 | 615 | 655 | 8.9E-6 | IPR001965 |
| SMART | SM00249 | PHD_3 | 701 | 758 | 0.0039 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 613 | 657 | 8.519899 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 699 | 760 | 8.626699 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 702 | 757 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 616 | 654 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 116 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 4.49E-172 |
| RefSeq | XP_004966585.1 | uncharacterized protein LOC101772696 [Setaria italica] | 0 |
| TrEMBL | A0A368QP54 | PHD-type domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_4G001200v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology