Basic Information
Locus ID:
AH06.1453
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Putative gypsy type transposon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 22184768 | 22187820 | - | AH06.1453 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.01 | 62,986.73 Da | 53.28 | 73.50 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 334 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 329 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| Coils | Coil | Coil | 382 | 409 | - | - |
| Coils | Coil | Coil | 459 | 479 | - | - |
| Coils | Coil | Coil | 266 | 286 | - | - |
| Coils | Coil | Coil | 229 | 249 | - | - |
| Coils | Coil | Coil | 417 | 444 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034570691.1 | uncharacterized protein LOC117835459 [Setaria viridis] | 1.45E-18 |
| TrEMBL | A0A3L6RZY1 | Retrotransposon protein, putative, Ty3-gypsy subclass OS=Panicum miliaceum OX=4540 GN=C2845_PM09G11190 PE=4 SV=1 | 9.46E-21 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||