Basic Information
Locus ID:
AH06.1427
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Protein FAR1-RELATED SEQUENCE
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 21491710 | 21495553 | + | AH06.1427 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.78 | 112,316.33 Da | 40.78 | 62.39 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04434 | SWIM zinc finger | 672 | 706 | 7.7E-5 | IPR007527 |
| Pfam | PF03101 | FAR1 DNA-binding domain | 267 | 334 | 2.3E-7 | IPR004330 |
| Pfam | PF10551 | MULE transposase domain | 389 | 482 | 2.2E-23 | IPR018289 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 921 | 974 | 1.5E-5 | IPR036875 |
| SMART | SM00575 | 26again6 | 683 | 710 | 1.1E-5 | IPR006564 |
| ProSiteProfiles | PS50966 | Zinc finger SWIM-type profile. | 672 | 708 | 9.297277 | IPR007527 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 887 | 922 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38180.1 | FAR1-related sequence 5. | 1.89E-55 |
| RefSeq | XP_047058230.1 | protein FAR-RED IMPAIRED RESPONSE 1-like [Lolium rigidum] | 1.89E-166 |
| Q9SZL8 | Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=1 | 1.86E-54 | |
| TrEMBL | A0A3L6SLD8 | Protein FAR1-RELATED SEQUENCE OS=Panicum miliaceum OX=4540 GN=C2845_PM07G11820 PE=3 SV=1 | 3.38E-208 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology