Basic Information
Locus ID:
AH06.1416
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
FDF
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 21295583 | 21312764 | - | AH06.1416 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.65 | 227,743.53 Da | 65.02 | 66.20 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF09532 | FDF domain | 1062 | 1157 | 7.7E-16 | IPR019050 |
| SMART | SM01199 | FDF_2 | 1061 | 1159 | 6.4E-24 | IPR019050 |
| ProSiteProfiles | PS51513 | FFD box profile. | 1117 | 1132 | 13.044357 | IPR025761 |
| ProSiteProfiles | PS51512 | DFDF domain profile. | 1055 | 1091 | 11.911432 | IPR025762 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1601 | 1629 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 638 | 663 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1298 | 1340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2003 | 2030 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1490 | 1558 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1544 | 1558 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 225 | - | - |
| Coils | Coil | Coil | 515 | 535 | - | - |
| Coils | Coil | Coil | 416 | 443 | - | - |
| Coils | Coil | Coil | 473 | 493 | - | - |
| Coils | Coil | Coil | 394 | 414 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G26110.2 | decapping 5. Encodes Decapping 5, required for mRNA decapping, P-body formation and translational repression during postembryonic development. | 4.15E-27 |
| RefSeq | XP_039843179.1 | protein decapping 5-like [Panicum virgatum] | 2.12E-216 |
| Q9C658 | Protein decapping 5 OS=Arabidopsis thaliana OX=3702 GN=DCP5 PE=1 SV=1 | 4.27E-26 | |
| TrEMBL | A0A8T0TSX5 | Protein decapping 5 OS=Panicum virgatum OX=38727 GN=PVAP13_4KG222800 PE=4 SV=1 | 1.23E-215 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||