Basic Information
Locus ID:
AH06.1351
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Putative gypsy type transposon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 19004245 | 19010655 | + | AH06.1351 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.49 | 61,468.73 Da | 68.98 | 64.91 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 386 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 416 | 447 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 518 | 560 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 197 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 190 | - | - |
| Coils | Coil | Coil | 324 | 351 | - | - |
| Coils | Coil | Coil | 296 | 316 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034570691.1 | uncharacterized protein LOC117835459 [Setaria viridis] | 5.93E-11 |
| TrEMBL | A0A3L6RZY1 | Retrotransposon protein, putative, Ty3-gypsy subclass OS=Panicum miliaceum OX=4540 GN=C2845_PM09G11190 PE=4 SV=1 | 4.96E-10 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||