Basic Information
Locus ID:
AH06.1327
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 18509411 | 18510220 | + | AH06.1327 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 16,333.46 Da | 49.74 | 71.57 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00504 | Chlorophyll A-B binding protein | 40 | 108 | 3.6E-7 | IPR022796 |
| SUPERFAMILY | SSF103511 | Chlorophyll a-b binding protein | 55 | 148 | 7.59E-15 | - |
| Gene3D | G3DSA:1.10.3460.10 | Chlorophyll a/b binding protein domain | 20 | 144 | 5.7E-21 | IPR023329 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54890.1 | photosystem I light harvesting complex gene 1. Encodes a component of the light harvesting complex associated with photosystem I. | 3.53E-54 |
| RefSeq | XP_025812841.1 | chlorophyll a-b binding protein 1B-21, chloroplastic [Panicum hallii] | 5.3E-61 |
| Q9SDM1 | Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare OX=4513 GN=LHC Ib-21 PE=1 SV=1 | 2.93E-55 | |
| TrEMBL | A0A3L6PD42 | Chlorophyll a-b binding protein, chloroplastic OS=Panicum miliaceum OX=4540 GN=C2845_PM10G09420 PE=3 SV=1 | 7.95E-60 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||