Basic Information
Locus ID:
AH06.1305
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
FBD
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 17764101 | 17779284 | + | AH06.1305 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.42 | 332,383.13 Da | 51.22 | 77.23 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02902 | Ulp1 protease family, C-terminal catalytic domain | 2848 | 2905 | 1.1E-4 | IPR003653 |
| Pfam | PF00646 | F-box domain | 84 | 126 | 3.0E-4 | IPR001810 |
| Pfam | PF13960 | Domain of unknown function (DUF4218) | 1228 | 1334 | 8.9E-38 | IPR025452 |
| Pfam | PF13963 | Transposase-associated domain | 571 | 636 | 3.0E-15 | IPR029480 |
| Pfam | PF02992 | Transposase family tnp2 | 875 | 1044 | 7.5E-65 | IPR004242 |
| Pfam | PF13952 | Domain of unknown function (DUF4216) | 1488 | 1553 | 2.9E-12 | IPR025312 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 2756 | 2920 | 4.12E-19 | IPR038765 |
| SUPERFAMILY | SSF81383 | F-box domain | 81 | 132 | 1.57E-10 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 195 | 410 | 2.83E-9 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 173 | 405 | 2.3E-8 | IPR032675 |
| Gene3D | G3DSA:3.40.395.10 | Adenoviral Proteinase; Chain A | 2742 | 2927 | 1.3E-9 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 72 | 124 | 1.4E-5 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 82 | 120 | 8.570165 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2026 | 2040 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2588 | 2636 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1833 | 1848 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 673 | 693 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2526 | 2680 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2024 | 2048 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2548 | 2569 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1825 | 1848 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2375 | 2398 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1555 | 1576 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 61 | - | - |
| Coils | Coil | Coil | 2326 | 2360 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55660.2 | FBD, F-box and Leucine Rich Repeat domains containing protein. | 2.3E-13 |
| RefSeq | XP_039778865.1 | uncharacterized protein LOC120646298 [Panicum virgatum] | 0 |
| Q1PFK0 | F-box/LRR-repeat protein At1g55660 OS=Arabidopsis thaliana OX=3702 GN=At1g55660 PE=2 SV=1 | 2.27E-12 | |
| TrEMBL | Q2QQL4 | Transposon protein, putative, CACTA, En/Spm sub-class OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g30630 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 46 | AH01.2619, AH01.3243, AH02.2591, AH02.744, AH03.1151 ... |
| Poaceae | Lolium multiflorum | 13 | gene-QYE76_005385, gene-QYE76_005912, gene-QYE76_006405 ... |