Basic Information
Locus ID:
AH06.1277
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
LBP / BPI / CETP family, C-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 17073043 | 17076986 | - | AH06.1277 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.12 | 52,507.96 Da | 35.29 | 112.03 | 0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01273 | LBP / BPI / CETP family, N-terminal domain | 37 | 217 | 3.9E-18 | IPR017942 |
| Pfam | PF02886 | LBP / BPI / CETP family, C-terminal domain | 277 | 476 | 5.3E-24 | IPR001124 |
| SUPERFAMILY | SSF55394 | Bactericidal permeability-increasing protein, BPI | 32 | 242 | 5.75E-31 | IPR017943 |
| SUPERFAMILY | SSF55394 | Bactericidal permeability-increasing protein, BPI | 244 | 477 | 1.83E-41 | IPR017943 |
| Gene3D | G3DSA:3.15.20.10 | - | 30 | 460 | 7.4E-113 | - |
| Gene3D | G3DSA:3.15.10.10 | - | 36 | 217 | 7.4E-113 | - |
| SMART | SM00329 | bpi2_2 | 275 | 473 | 2.3E-13 | IPR001124 |
| PIRSF | PIRSF002417 | Lipid_binding_protein | 6 | 482 | 4.6E-119 | IPR030675 |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04970.1 | lipid-binding serum glycoprotein family protein. | 2.09E-163 |
| RefSeq | XP_039805797.1 | putative BPI/LBP family protein At1g04970 [Panicum virgatum] | 0 |
| Q9MAU5 | Putative BPI/LBP family protein At1g04970 OS=Arabidopsis thaliana OX=3702 GN=At1g04970 PE=2 SV=1 | 2.01E-162 | |
| TrEMBL | A0A8T0T9D3 | BPI2 domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_4NG218000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg24573, jg38407 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12202, gene_20616 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah008913, Ah038293 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g089210, BVRB_9g204550 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg14531, Sbi_jg18348, Sbi_jg36733, Sbi_jg53786 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg10382, Seu_jg4676 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00012689, GOSA_00017423 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl23472, Sgl28599, Sgl78233, Sgl80725 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000010185, gene:ENSEOMG00000013451 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.4AG0019380, CQ.Regalona.r1.4AG0023600 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30017620, pistato.v30156220 |
| Apiaceae | Apium graveolens | 5 | Ag11G03258, Ag1G00793, Ag4G02413, Ag5G00781, Ag5G02303 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G012470, scaffold019163G000020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696215, gene-LOC103713618 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2104.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G07835, Ftri2G05687 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G04970.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007436m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g03840.v2.2, Sp3g18300.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g045760.2N, BniB06g045770.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G1372, Ceq02G2323 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1536, Cgl02G2411 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g04910 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g08830 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.2156, evm.TU.LG05.1944 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008733 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G03435, Lb2G10880, Lb8G35663, Lb8G36484 |
| Poaceae | Echinochloa crus-galli | 7 | AH03.2369, AH06.1277, BH03.2495, BH06.1324, CH03.2689 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0518910, gene-QOZ80_6AG0539330 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0490240.1, HORVU.MOREX.r3.7HG0674970.2 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_006102, gene-QYE76_029566 |
| Poaceae | Oryza coarctata | 4 | Oco11G008020, Oco12G008070, Oco17G007660, Oco18G007920 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g20430.1, LOC_Os09g30474.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G221200, gene-BS78_10G130600 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0303850, Pt_Chr0303863, Pt_Chr0501120, Pt_Chr0701617 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr10G001580, Chr10G007540, Chr11G017160 |
| Poaceae | Thinopyrum elongatum | 3 | Tel5E01G417800, Tel5E01G418000, Tel7E01G405500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG019090, gene_TRIDC5BG043070 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS5A02G261100.1, TraesCS5A02G261300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb316440_P001, Zm00001eb381520_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10479, nbis-gene-51648 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30524, Zma_g31808 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG02.2223, evm.TU.LG02.2224, evm.TU.LG02.515 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g09450 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1583, evm.TU.Scaffold_7_RagTag.123 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12072, nbisL1-mrna-19608 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1232, nbisL1-mrna-3981 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10929, nbisL1-mrna-22295 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000006l.912, evm.TU.utg000028l.73 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00010356, Maker00013377 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10439, nbisL1-mrna-8037 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15519, nbisL1-mrna-22638 |
| Salicaceae | Populus euphratica | 2 | populus_peu00923, populus_peu26959 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616871 |
| Solanaceae | Solanum chilense | 1 | SOLCI005641400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026378 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.24697_chr08_+, gene_2216 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G0847, TC05G2681 |
| Zosteraceae | Zostera marina | 1 | Zosma03g14350.v3.1 |