Basic Information
Locus ID:
AH06.1070
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the peptidase A1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 12014302 | 12015156 | + | AH06.1070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 29,287.61 Da | 41.68 | 71.13 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05471 | pepsin_like | 84 | 225 | 2.92206E-22 | IPR034164 |
| Pfam | PF14543 | Xylanase inhibitor N-terminal | 84 | 219 | 7.6E-29 | IPR032861 |
| SUPERFAMILY | SSF50630 | Acid proteases | 81 | 222 | 1.41E-31 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 73 | 222 | 1.2E-28 | IPR021109 |
| ProSiteProfiles | PS51767 | Peptidase family A1 domain profile. | 84 | 284 | 16.673897 | IPR033121 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 284 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034568566.1 | aspartic proteinase nepenthesin-2-like [Setaria viridis] | 3.48E-62 |
| Q766C2 | Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis OX=150966 GN=nep2 PE=1 SV=1 | 7.35E-26 | |
| TrEMBL | A0A4U6TB85 | Peptidase A1 domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_8G033000v2 PE=3 SV=1 | 7.87E-61 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||