Basic Information
Locus ID:
AH06.1062
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 11802155 | 11802517 | + | AH06.1062 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 13,150.32 Da | 60.62 | 96.08 | 0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 64 | 107 | 4.0E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 64 | 112 | 9.84E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 31 | 112 | 3.7E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 65 | 106 | 6.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 65 | 107 | 12.607302 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65040.5 | - | 2.33E-8 |
| RefSeq | XP_025813223.1 | E3 ubiquitin-protein ligase Os03g0188200-like [Panicum hallii] | 3.26E-38 |
| Q6NPT7 | ERAD-associated E3 ubiquitin-protein ligase HRD1B OS=Arabidopsis thaliana OX=3702 GN=HRD1B PE=2 SV=1 | 2.91E-7 | |
| TrEMBL | A0A4U6UW69 | RING-type domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_4G114700v2 PE=4 SV=1 | 5.04E-39 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 10 | AH06.1062, BH06.1099, BH06.1102, BH06.1103, BH06.1104 ... |
| Poaceae | Eleusine coracana subsp. coracana | 8 | gene-QOZ80_6AG0516090, gene-QOZ80_6AG0516120 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0092440.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_015245, gene-QYE76_029210, gene-QYE76_029211 ... |
| Poaceae | Oryza coarctata | 1 | Oco11G006830 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g14640.1, LOC_Os06g14650.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_10G110300, gene-BS78_K035000 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0201501, Pt_Chr0201502, Pt_Chr0404508, Pt_Chr0404509 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr11G018380 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G374000 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7BG016420 |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G422300.1.cds1, TraesCS1D02G430400.1.cds1 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-50336, nbis-gene-56364 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29463, Zma_g31703 |