Basic Information
Locus ID:
AH06.1021
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 11149413 | 11151544 | - | AH06.1021 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 14,922.85 Da | 43.39 | 81.91 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 50 | 120 | 2.2E-11 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 41 | 126 | 2.0E-21 | IPR015943 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22910.1 | FIZZY-related 2. | 9.27E-35 |
| RefSeq | XP_002468612.1 | protein FIZZY-RELATED 2 [Sorghum bicolor] | 8.33E-40 |
| Q8L3Z8 | Protein FIZZY-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=FZR2 PE=1 SV=1 | 9.12E-34 | |
| TrEMBL | A0A8T0P0G4 | ANAPC4_WD40 domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_9KG543500 PE=3 SV=1 | 7.25E-39 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | AH06.1021 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7BG004200 |
| Poaceae | Triticum aestivum | 1 | TraesCS5A02G257600.2 |
| Poaceae | Zea mays | 1 | Zm00001eb263020_P005 |