Basic Information
Locus ID:
AH05.965
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 8777817 | 8780125 | + | AH05.965 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 38,116.06 Da | 24.57 | 89.64 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02242 | cupin_11S_legumin_N | 4 | 174 | 7.19216E-62 | - |
| CDD | cd02243 | cupin_11S_legumin_C | 201 | 355 | 2.78691E-78 | - |
| Pfam | PF00190 | Cupin | 8 | 158 | 1.0E-25 | IPR006045 |
| Pfam | PF00190 | Cupin | 199 | 341 | 1.9E-23 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 6 | 347 | 5.85E-48 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 8 | 180 | 3.5E-29 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 198 | 358 | 1.1E-50 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 198 | 342 | 2.5E-17 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 3 | 160 | 1.4E-30 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 214 | 234 | 1.1E-15 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 279 | 294 | 1.1E-15 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 261 | 277 | 1.1E-15 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 297 | 315 | 1.1E-15 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 319 | 336 | 1.1E-15 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28680.1 | RmlC-like cupins superfamily protein. | 1.55E-184 |
| RefSeq | XP_034588534.1 | glutelin type-D 1-like [Setaria viridis] | 7.44E-256 |
| P07730 | Glutelin type-A 2 OS=Oryza sativa subsp. japonica OX=39947 GN=GLUA2 PE=1 SV=1 | 8.52E-26 | |
| TrEMBL | A0A4U6VK22 | 11S seed storage protein OS=Setaria viridis OX=4556 GN=SEVIR_3G061600v2 PE=3 SV=1 | 1.68E-254 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology