Basic Information
Locus ID:
AH05.912
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
UPL4
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 8247408 | 8253712 | - | AH05.912 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 145,691.91 Da | 44.44 | 90.78 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 919 | 1300 | 1.76421E-100 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 965 | 1302 | 4.0E-73 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 911 | 1295 | 3.14E-82 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 11 | 383 | 1.73E-17 | IPR016024 |
| Gene3D | G3DSA:3.30.2160.10 | Hect, E3 ligase catalytic domain | 1049 | 1146 | 9.5E-38 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 918 | 1181 | 9.5E-38 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 1 | 397 | 1.6E-25 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1186 | 1300 | 5.5E-25 | - |
| SMART | SM00119 | hect_3 | 929 | 1302 | 2.0E-80 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 943 | 1302 | 57.807919 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 640 | 669 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 647 | 669 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 888 | 916 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 3.32E-220 |
| RefSeq | XP_034584352.1 | E3 ubiquitin-protein ligase UPL4-like isoform X2 [Setaria viridis] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 3.22E-219 | |
| TrEMBL | A0A1E5UXM8 | HECT-type E3 ubiquitin transferase OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0021310 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology