Basic Information
Locus ID:
AH05.581
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 5189242 | 5192135 | - | AH05.581 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 26,689.93 Da | 46.31 | 67.23 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 32 | 240 | 4.2E-76 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 140 | 230 | 4.46E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 138 | 243 | 1.9E-42 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 143 | 231 | 27.856916 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 99 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29080.1 | phytochrome-associated protein 2. phytochrome-associated protein 2 (PAP2) | 1.94E-68 |
| RefSeq | XP_039836129.1 | auxin-responsive protein IAA17-like [Panicum virgatum] | 2.18E-145 |
| Q75GB1 | Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA17 PE=2 SV=1 | 1.86E-125 | |
| TrEMBL | A0A3L6T0Q0 | Auxin-responsive protein OS=Panicum miliaceum OX=4540 GN=C2845_PM05G08940 PE=3 SV=1 | 1.41E-143 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology