Basic Information
Locus ID:
AH05.44
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 503904 | 504431 | - | AH05.44 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.18 | 19,478.66 Da | 73.01 | 87.66 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 130 | 169 | 2.9E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 125 | 173 | 1.99E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 88 | 173 | 1.4E-13 | IPR013083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 112 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G09100.1 | RING/U-box superfamily protein. | 8.37E-9 |
| RefSeq | XP_025827428.1 | RING-H2 finger protein ATL39-like [Panicum hallii] | 6.03E-23 |
| Q9M0R7 | RING-H2 finger protein ATL39 OS=Arabidopsis thaliana OX=3702 GN=ATL39 PE=2 SV=1 | 8.17E-8 | |
| TrEMBL | A0A8T0U061 | RING-type E3 ubiquitin transferase OS=Panicum virgatum OX=38727 GN=PVAP13_3NG121933 PE=4 SV=1 | 5.32E-21 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||