HalophFGD

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Basic Information
Locus ID: AH05.424
Species & Taxonomic ID: Echinochloa crus-galli & 90397
Genome Assembly: GWHBDNR00000000
Description: Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
Chromosome Start End Strand ID
AH05 3683198 3691635 - AH05.424
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
9.02 219,000.30 Da 52.37 79.29 -0.32
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd09272 RNase_HI_RT_Ty1 1865 2004 1.40393E-69 -
Pfam PF07727 Reverse transcriptase (RNA-dependent DNA polymerase) 1537 1780 3.9E-99 IPR013103
Pfam PF13976 GAG-pre-integrase domain 1016 1083 4.4E-14 IPR025724
Pfam PF13961 Domain of unknown function (DUF4219) 589 614 2.1E-6 IPR025314
Pfam PF14223 gag-polypeptide of LTR copia-type 623 753 7.7E-10 -
Pfam PF00098 Zinc knuckle 826 842 6.9E-6 IPR001878
Pfam PF00665 Integrase core domain 1098 1198 5.7E-14 IPR001584
SUPERFAMILY SSF53098 Ribonuclease H-like 1100 1270 3.41E-43 IPR012337
SUPERFAMILY SSF56672 DNA/RNA polymerases 1538 1972 1.02E-29 IPR043502
SUPERFAMILY SSF57756 Retrovirus zinc finger-like domains 810 849 2.75E-8 IPR036875
Gene3D G3DSA:3.30.420.10 - 1091 1270 6.1E-43 IPR036397
Gene3D G3DSA:4.10.60.10 - 815 851 1.8E-6 -
SMART SM00343 c2hcfinal6 826 842 4.0E-4 IPR001878
ProSiteProfiles PS50158 Zinc finger CCHC-type profile. 827 842 10.410928 IPR001878
ProSiteProfiles PS50994 Integrase catalytic domain profile. 1095 1261 26.444931 IPR001584
PRINTS PR01217 Proline rich extensin signature 154 179 1.1E-9 -
PRINTS PR01217 Proline rich extensin signature 118 135 1.1E-9 -
PRINTS PR01217 Proline rich extensin signature 38 54 1.1E-9 -
PRINTS PR01217 Proline rich extensin signature 24 36 1.1E-9 -
PRINTS PR01217 Proline rich extensin signature 93 109 1.1E-9 -
MobiDBLite mobidb-lite consensus disorder prediction 782 799 - -
MobiDBLite mobidb-lite consensus disorder prediction 141 168 - -
MobiDBLite mobidb-lite consensus disorder prediction 1358 1461 - -
MobiDBLite mobidb-lite consensus disorder prediction 1392 1408 - -
MobiDBLite mobidb-lite consensus disorder prediction 1364 1381 - -
MobiDBLite mobidb-lite consensus disorder prediction 1417 1433 - -
MobiDBLite mobidb-lite consensus disorder prediction 152 168 - -
MobiDBLite mobidb-lite consensus disorder prediction 28 57 - -
MobiDBLite mobidb-lite consensus disorder prediction 1434 1448 - -
MobiDBLite mobidb-lite consensus disorder prediction 782 827 - -
MobiDBLite mobidb-lite consensus disorder prediction 408 428 - -
MobiDBLite mobidb-lite consensus disorder prediction 28 68 - -
Coils Coil Coil 461 481 - -
Coils Coil Coil 438 458 - -
Gene Ontology
Biological Process:
GO:0015074 (DNA integration)
Molecular Function:
GO:0003676 (nucleic acid binding) GO:0008270 (zinc ion binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT4G23160.2 - 1.22E-104
RefSeq XP_040254454.2 LOW QUALITY PROTEIN: uncharacterized protein LOC109774810 [Aegilops tauschii subsp. strangulata] 0
Swiss-Prot P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 1.02E-191
TrEMBL Q9AY40 Putative gag-pol polyprotein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0027P10.24 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Asteraceae Flaveria trinervia 4 Ftri18G33038, Ftri6G26243, Ftri6G34149, FtriNA26240
Brassicaceae Brassica nigra 3 BniB02g044040.2N, BniB05g046390.2N, BniB07g028240.2N
Plantaginaceae Plantago ovata 2 Pov_00029076, Pov_00039561
Poaceae Echinochloa crus-galli 7 AH01.168, AH01.4944, AH04.1262, AH05.424, AH07.1449 ...
CH03.241, CH08.965
Poaceae Eleusine coracana subsp. coracana 85 gene-QOZ80_1AG0019300, gene-QOZ80_1AG0021820 ...
gene-QOZ80_1AG0024230, gene-QOZ80_1AG0037390, gene-QOZ80_1BG0049180, gene-QOZ80_1BG0085100, gene-QOZ80_2AG0105550, gene-QOZ80_2AG0133820, gene-QOZ80_2AG0148240, gene-QOZ80_2BG0158440, gene-QOZ80_2BG0169390, gene-QOZ80_2BG0181270, gene-QOZ80_2BG0183300, gene-QOZ80_2BG0199500, gene-QOZ80_2BG0201130, gene-QOZ80_2BG0205470, gene-QOZ80_2BG0206350, gene-QOZ80_3AG0208060, gene-QOZ80_3AG0220240, gene-QOZ80_3AG0224320, gene-QOZ80_3AG0225270, gene-QOZ80_3AG0227500, gene-QOZ80_3AG0235790, gene-QOZ80_3AG0243220, gene-QOZ80_3AG0244010, gene-QOZ80_3AG0245460, gene-QOZ80_3BG0256980, gene-QOZ80_3BG0283640, gene-QOZ80_4AG0323660, gene-QOZ80_4BG0329460, gene-QOZ80_4BG0330660, gene-QOZ80_4BG0330910, gene-QOZ80_4BG0332300, gene-QOZ80_4BG0350850, gene-QOZ80_5AG0362120, gene-QOZ80_5AG0362550, gene-QOZ80_5AG0365140, gene-QOZ80_5AG0388210, gene-QOZ80_5AG0395900, gene-QOZ80_5AG0398000, gene-QOZ80_5AG0407020, gene-QOZ80_5BG0416820, gene-QOZ80_5BG0421890, gene-QOZ80_5BG0426390, gene-QOZ80_5BG0429910, gene-QOZ80_5BG0452680, gene-QOZ80_5BG0453400, gene-QOZ80_5BG0455110, gene-QOZ80_5BG0456990, gene-QOZ80_6AG0507950, gene-QOZ80_6AG0522670, gene-QOZ80_6AG0526690, gene-QOZ80_6AG0534700, gene-QOZ80_6BG0459300, gene-QOZ80_6BG0460940, gene-QOZ80_6BG0494750, gene-QOZ80_6BG0496090, gene-QOZ80_6BG0502860, gene-QOZ80_7AG0560080, gene-QOZ80_7AG0575580, gene-QOZ80_7BG0584000, gene-QOZ80_7BG0585870, gene-QOZ80_7BG0595270, gene-QOZ80_7BG0595920, gene-QOZ80_7BG0598960, gene-QOZ80_8AG0618400, gene-QOZ80_8AG0619760, gene-QOZ80_8AG0620590, gene-QOZ80_8AG0639870, gene-QOZ80_8BG0656020, gene-QOZ80_8BG0665070, gene-QOZ80_9AG0670230, gene-QOZ80_9AG0673270, gene-QOZ80_9AG0674220, gene-QOZ80_9AG0675740, gene-QOZ80_9AG0681710, gene-QOZ80_9BG0694080, gene-QOZ80_9BG0701040, gene-QOZ80_9BG0709940, gene-QOZ80_9BG0711120, gene-QOZ80_9BG0711600, gene-QOZ80_UnG0724950, gene-QOZ80_UnG0726010, gene-QOZ80_UnG0726990, gene-QOZ80_UnG0730010
Poaceae Lolium multiflorum 12 gene-QYE76_002090, gene-QYE76_004107, gene-QYE76_010998 ...
gene-QYE76_013193, gene-QYE76_029165, gene-QYE76_037880, gene-QYE76_051587, gene-QYE76_052644, gene-QYE76_053432, gene-QYE76_056804, gene-QYE76_058369, gene-QYE76_066013
Poaceae Oryza coarctata 2 Oco06G010700, Oco21G004780
Poaceae Sporobolus alterniflorus 17 Chr01G029280, Chr04G018110, Chr04G029980, Chr05G019600 ...
Chr05G026820, Chr08G012260, Chr0G001440, Chr11G014150, Chr12G014230, Chr15G010750, Chr19G011560, Chr20G012820, Chr22G007660, Chr24G012860, Chr26G013550, Chr27G000450, Chr30G002280
Poaceae Zoysia japonica 66 nbis-gene-12256, nbis-gene-12257, nbis-gene-1525 ...
nbis-gene-1526, nbis-gene-16914, nbis-gene-17541, nbis-gene-19679, nbis-gene-24621, nbis-gene-27637, nbis-gene-27673, nbis-gene-27674, nbis-gene-33940, nbis-gene-33941, nbis-gene-34280, nbis-gene-34281, nbis-gene-34507, nbis-gene-39486, nbis-gene-39685, nbis-gene-40438, nbis-gene-40687, nbis-gene-41962, nbis-gene-43787, nbis-gene-44380, nbis-gene-44391, nbis-gene-44606, nbis-gene-46358, nbis-gene-46929, nbis-gene-48847, nbis-gene-49079, nbis-gene-50718, nbis-gene-50802, nbis-gene-50849, nbis-gene-51475, nbis-gene-51633, nbis-gene-52384, nbis-gene-52833, nbis-gene-52891, nbis-gene-52892, nbis-gene-53916, nbis-gene-53917, nbis-gene-54339, nbis-gene-54582, nbis-gene-54696, nbis-gene-55542, nbis-gene-55996, nbis-gene-56037, nbis-gene-56213, nbis-gene-56371, nbis-gene-56891, nbis-gene-56941, nbis-gene-56960, nbis-gene-57547, nbis-gene-57579, nbis-gene-57604, nbis-gene-57883, nbis-gene-58199, nbis-gene-58243, nbis-gene-58244, nbis-gene-58280, nbis-gene-58281, nbis-gene-58288, nbis-gene-58660, nbis-gene-59066, nbis-gene-59072, nbis-gene-6411, nbis-gene-643
Poaceae Zoysia macrostachya 1 Zma_g3359
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