Basic Information
Locus ID:
AH05.4210
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 59389239 | 59391532 | + | AH05.4210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 32,958.77 Da | 56.09 | 66.30 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 98 | 142 | 1.30278E-28 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 99 | 145 | 3.6E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 94 | 147 | 3.54E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 62 | 155 | 3.1E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 100 | 140 | 1.9E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 100 | 141 | 13.197422 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 115 | 124 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 185 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 3.6E-76 |
| RefSeq | XP_022681228.1 | E3 ubiquitin-protein ligase RNF5 isoform X1 [Setaria italica] | 4.29E-160 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 1.61E-29 | |
| TrEMBL | A0A4U6VJM6 | RING-type E3 ubiquitin transferase OS=Setaria viridis OX=4556 GN=SEVIR_3G422700v2 PE=4 SV=1 | 2.78E-158 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology