Basic Information
Locus ID:
AH05.4170
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Thaumatin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 58946981 | 58947481 | - | AH05.4170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.53 | 16,384.41 Da | 33.20 | 73.01 | 0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00314 | Thaumatin family | 28 | 147 | 4.5E-32 | IPR001938 |
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 21 | 144 | 1.83E-45 | IPR037176 |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 22 | 159 | 1.7E-43 | IPR037176 |
| SMART | SM00205 | tha2 | 24 | 161 | 3.3E-20 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 1 | 155 | 9.6E-43 | IPR001938 |
| ProSiteProfiles | PS51367 | Thaumatin family profile. | 21 | 139 | 26.92944 | IPR001938 |
| ProSitePatterns | PS00316 | Thaumatin family signature. | 77 | 92 | - | IPR017949 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 65 | 76 | 2.9E-36 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 23 | 35 | 2.9E-36 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 112 | 128 | 2.9E-36 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 43 | 52 | 2.9E-36 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 77 | 106 | 2.9E-36 | IPR001938 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 166 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G77700.2 | - | 4.36E-32 |
| RefSeq | XP_025808144.1 | thaumatin-like pathogenesis-related protein 4 [Panicum hallii] | 8.63E-76 |
| P31110 | Thaumatin-like protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0628600 PE=1 SV=1 | 1.78E-62 | |
| TrEMBL | A0A3L6RCV8 | Thaumatin-like protein OS=Panicum miliaceum OX=4540 GN=C2845_PM06G34900 PE=4 SV=1 | 3.38E-75 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology