Basic Information
Locus ID:
AH05.4169
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Thaumatin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 58936053 | 58936565 | - | AH05.4169 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 17,049.96 Da | 29.57 | 66.65 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09217 | TLP-P | 24 | 170 | 1.66233E-72 | - |
| Pfam | PF00314 | Thaumatin family | 28 | 143 | 1.2E-31 | IPR001938 |
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 21 | 170 | 1.57E-53 | IPR037176 |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 22 | 170 | 4.1E-49 | IPR037176 |
| SMART | SM00205 | tha2 | 24 | 170 | 1.9E-39 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 138 | 170 | 0.0038 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 1 | 149 | 1.4E-43 | IPR001938 |
| ProSiteProfiles | PS51367 | Thaumatin family profile. | 21 | 170 | 33.224243 | IPR001938 |
| ProSitePatterns | PS00316 | Thaumatin family signature. | 77 | 92 | - | IPR017949 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 65 | 76 | 4.5E-41 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 23 | 35 | 4.5E-41 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 160 | 169 | 4.5E-41 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 112 | 128 | 4.5E-41 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 43 | 52 | 4.5E-41 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 77 | 106 | 4.5E-41 | IPR001938 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G77700.2 | - | 9.17E-33 |
| RefSeq | XP_025808144.1 | thaumatin-like pathogenesis-related protein 4 [Panicum hallii] | 3.02E-100 |
| P50698 | Thaumatin-like pathogenesis-related protein 4 OS=Avena sativa OX=4498 GN=RASTL-4 PE=2 SV=1 | 3.61E-80 | |
| TrEMBL | A0A3L6RCV8 | Thaumatin-like protein OS=Panicum miliaceum OX=4540 GN=C2845_PM06G34900 PE=4 SV=1 | 6.82E-99 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology