Basic Information
Locus ID:
AH05.4162
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 58903402 | 58905029 | + | AH05.4162 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 37,407.65 Da | 37.26 | 74.21 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12678 | RING-H2 zinc finger domain | 91 | 117 | 3.0E-9 | IPR024766 |
| Pfam | PF00314 | Thaumatin family | 215 | 326 | 1.7E-28 | IPR001938 |
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 208 | 359 | 4.45E-42 | IPR037176 |
| SUPERFAMILY | SSF57850 | RING/U-box | 88 | 124 | 1.63E-11 | - |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 209 | 359 | 3.5E-42 | IPR037176 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 59 | 123 | 1.4E-10 | IPR013083 |
| SMART | SM00205 | tha2 | 211 | 359 | 3.6E-25 | IPR001938 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 94 | 117 | 8.963311 | IPR001841 |
| ProSiteProfiles | PS51367 | Thaumatin family profile. | 208 | 359 | 28.589437 | IPR001938 |
| ProSitePatterns | PS00316 | Thaumatin family signature. | 266 | 281 | - | IPR017949 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 230 | 239 | 2.4E-26 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 349 | 358 | 2.4E-26 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 300 | 316 | 2.4E-26 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 252 | 263 | 2.4E-26 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 210 | 222 | 2.4E-26 | IPR001938 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 63 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11650.1 | osmotin 34. osmotin-like protein | 3.08E-28 |
| RefSeq | XP_039802982.1 | thaumatin-like pathogenesis-related protein 3 [Panicum virgatum] | 6.54E-68 |
| P50698 | Thaumatin-like pathogenesis-related protein 4 OS=Avena sativa OX=4498 GN=RASTL-4 PE=2 SV=1 | 2.2E-66 | |
| TrEMBL | A0A1E5UTR7 | Thaumatin-like protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0022729 PE=4 SV=1 | 1.42E-84 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology