Basic Information
Locus ID:
AH05.4146
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 58716138 | 58719862 | - | AH05.4146 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.13 | 66,049.30 Da | 51.12 | 57.74 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16620 | vRING-HC-C4C4_RBBP6 | 178 | 219 | 1.05856E-12 | - |
| Pfam | PF08783 | DWNN domain | 4 | 82 | 5.1E-15 | IPR014891 |
| SUPERFAMILY | SSF57850 | RING/U-box | 175 | 244 | 8.58E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 164 | 249 | 1.2E-11 | IPR013083 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 87 | 4.8E-16 | - |
| SMART | SM01180 | DWNN_2 | 4 | 83 | 2.0E-33 | IPR014891 |
| ProSiteProfiles | PS51282 | DWNN domain profile. | 4 | 83 | 13.359107 | IPR014891 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 494 | 508 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 568 | 583 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 472 | 514 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 535 | 605 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 473 | 493 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 549 | 567 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 584 | 605 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47430.4 | - | 1.42E-20 |
| RefSeq | XP_025805389.1 | E3 ubiquitin ligase PARAQUAT TOLERANCE 3-like isoform X1 [Panicum hallii] | 1.08E-306 |
| B9DFV2 | E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1 | 1.7E-19 | |
| TrEMBL | A0A2S3HFM0 | DWNN domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_3G505800 PE=4 SV=1 | 2.43E-305 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||