Basic Information
Locus ID:
AH05.4108
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 58282451 | 58289542 | + | AH05.4108 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.16 | 99,770.18 Da | 47.58 | 77.22 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 705 | 869 | 3.53816E-67 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 273 | 868 | 4.6E-83 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 271 | 870 | 8.05E-110 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 256 | 479 | 4.0E-68 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 620 | 881 | 8.7E-58 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 273 | 871 | 56.053791 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 813 | 830 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 274 | 289 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 5.55E-281 |
| RefSeq | XP_004963176.1 | ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [Setaria italica] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 5.34E-280 | |
| TrEMBL | A0A368QNL8 | Ubiquitin carboxyl-terminal hydrolase OS=Setaria italica OX=4555 GN=SETIT_3G388400v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology