Basic Information
Locus ID:
AH05.3968
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
IAA16
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 56711852 | 56715274 | - | AH05.3968 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 28,997.66 Da | 57.98 | 71.88 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 9 | 267 | 3.5E-88 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 152 | 257 | 1.37E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 155 | 270 | 1.3E-44 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 159 | 258 | 25.164677 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04730.1 | indoleacetic acid-induced protein 16. early auxin-induced (IAA16) | 5.49E-85 |
| RefSeq | XP_025809974.1 | auxin-responsive protein IAA30-like [Panicum hallii] | 1.31E-121 |
| P0C132 | Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA30 PE=2 SV=1 | 1.54E-112 | |
| TrEMBL | A0A2T7EIY9 | Auxin-responsive protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_3G463500 PE=3 SV=1 | 2.97E-120 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology