HalophFGD

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Basic Information
Locus ID: AH05.3939
Species & Taxonomic ID: Echinochloa crus-galli & 90397
Genome Assembly: GWHBDNR00000000
Description: WD domain, G-beta repeat
Maps and Mapping Data
Chromosome Start End Strand ID
AH05 56292031 56306567 + AH05.3939
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.59 188,964.14 Da 48.40 80.20 -0.30
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF17177 Pentacotripeptide-repeat region of PRORP 266 385 2.1E-7 IPR033443
Pfam PF00400 WD domain, G-beta repeat 1501 1536 0.064 IPR001680
Pfam PF12854 PPR repeat 720 752 1.3E-6 IPR002885
Pfam PF12854 PPR repeat 617 646 3.3E-7 IPR002885
Pfam PF12854 PPR repeat 175 206 5.3E-7 IPR002885
Pfam PF13041 PPR repeat family 554 597 3.1E-8 IPR002885
Pfam PF04502 Family of unknown function (DUF572) 928 1187 1.2E-66 IPR007590
Pfam PF13041 PPR repeat family 483 527 3.4E-11 IPR002885
Pfam PF01535 PPR repeat 393 419 0.24 IPR002885
Pfam PF01535 PPR repeat 447 476 0.014 IPR002885
Pfam PF01535 PPR repeat 218 246 2.3E-5 IPR002885
Pfam PF13041 PPR repeat family 653 702 1.2E-13 IPR002885
SUPERFAMILY SSF50978 WD40 repeat-like 1248 1539 2.0E-47 IPR036322
SUPERFAMILY SSF81901 HCP-like 564 750 2.56E-8 -
SUPERFAMILY SSF81901 HCP-like 293 580 4.18E-5 -
SUPERFAMILY SSF48452 TPR-like 187 279 7.59E-5 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 62 208 1.0E-16 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 472 541 1.0E-13 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 542 685 5.2E-38 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 277 347 5.9E-18 IPR011990
Gene3D G3DSA:2.130.10.10 - 1249 1474 3.2E-30 IPR015943
Gene3D G3DSA:2.130.10.10 - 1475 1582 1.3E-9 IPR015943
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 686 765 4.7E-20 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 348 471 7.9E-14 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 209 276 2.3E-9 IPR011990
SMART SM00320 WD40_4 1286 1325 0.022 IPR001680
SMART SM00320 WD40_4 1370 1409 0.017 IPR001680
SMART SM00320 WD40_4 1455 1493 40.0 IPR001680
SMART SM00320 WD40_4 1328 1367 0.0075 IPR001680
SMART SM00320 WD40_4 1414 1451 71.0 IPR001680
SMART SM00320 WD40_4 1233 1280 150.0 IPR001680
SMART SM00320 WD40_4 1496 1536 4.2E-4 IPR001680
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 586 614 2.6E-4 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 656 689 2.8E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 217 248 7.0E-7 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 691 724 1.1E-9 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 516 549 1.1E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 727 753 3.9E-6 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 180 208 3.1E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 483 515 2.8E-4 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 287 319 5.8E-6 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 554 585 5.0E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 621 654 3.2E-6 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 322 355 2.9E-8 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 447 477 8.7E-4 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 393 419 0.0031 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 619 653 13.08785 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 689 723 12.101333 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 390 424 8.604678 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 319 353 12.704205 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 549 583 9.689847 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 584 618 11.016164 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 444 478 9.021208 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 514 548 11.125777 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 479 513 10.829822 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 215 249 11.651919 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 654 688 10.742131 IPR002885
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 1293 1334 9.03805 IPR001680
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 724 758 10.380408 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 178 208 10.128299 IPR002885
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 1504 1538 9.439068 IPR001680
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 284 318 10.753093 IPR002885
ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1523 1537 - IPR019775
MobiDBLite mobidb-lite consensus disorder prediction 1556 1571 - -
MobiDBLite mobidb-lite consensus disorder prediction 1638 1657 - -
MobiDBLite mobidb-lite consensus disorder prediction 1665 1721 - -
MobiDBLite mobidb-lite consensus disorder prediction 1545 1607 - -
MobiDBLite mobidb-lite consensus disorder prediction 1670 1686 - -
MobiDBLite mobidb-lite consensus disorder prediction 1640 1657 - -
Coils Coil Coil 1100 1124 - -
Coils Coil Coil 188 208 - -
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT1G25682.1 Family of unknown function (DUF572) . 7.16E-126
RefSeq XP_004961413.1 WD repeat-containing protein 55 [Setaria italica] 6.13E-207
Swiss-Prot O80775 WD repeat-containing protein 55 OS=Arabidopsis thaliana OX=3702 GN=WDR55 PE=1 SV=2 1.26E-120
TrEMBL A0A3L6RA69 WD repeat-containing protein 55 OS=Panicum miliaceum OX=4540 GN=C2845_PM06G00310 PE=3 SV=1 1.21E-207
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 1 jg28624
Aizoaceae Mesembryanthemum crystallinum 1 gene_22141
Amaranthaceae Atriplex hortensis 1 Ah025008
Amaranthaceae Beta vulgaris 1 BVRB_3g063810
Amaranthaceae Salicornia bigelovii 3 Sbi_jg25929, Sbi_jg25930, Sbi_jg9768
Amaranthaceae Salicornia europaea 1 Seu_jg18901
Amaranthaceae Suaeda aralocaspica 1 GOSA_00025658
Amaranthaceae Suaeda glauca 4 Sgl21016, Sgl21017, Sgl44624, Sgl49381
Amaranthaceae Chenopodium album 4 gene:ENSEOMG00000011597, gene:ENSEOMG00000023271 ...
gene:ENSEOMG00000031893, gene:ENSEOMG00000048043
Amaranthaceae Chenopodium quinoa 2 CQ.Regalona.r1.8AG0003350, CQ.Regalona.r1.8BG0003430
Anacardiaceae Pistacia vera 1 pistato.v30016120
Apiaceae Apium graveolens 1 Ag2G00506
Arecaceae Cocos nucifera 1 COCNU_12G004770
Arecaceae Phoenix dactylifera 2 gene-LOC103705065, gene-LOC103716964
Asparagaceae Asparagus officinalis 1 AsparagusV1_06.1288.V1.1
Asteraceae Flaveria trinervia 1 Ftri1G10923
Brassicaceae Arabidopsis thaliana 1 AT2G34260.1
Brassicaceae Eutrema salsugineum 1 Thhalv10016919m.g.v1.0
Brassicaceae Schrenkiella parvula 1 Sp4g16550.v2.2
Brassicaceae Brassica nigra 2 BniB01g009990.2N, BniB06g009710.2N
Casuarinaceae Casuarina equisetifolia 2 Ceq01G2330, Ceq06G0020
Casuarinaceae Casuarina glauca 2 Cgl01G2638, Cgl06G0023
Cymodoceaceae Cymodocea nodosa 1 gene.Cymno11g05310
Dunaliellaceae Dunaliella salina 1 Dusal.0001s00037.v1.0
Hydrocharitaceae Thalassia testudinum 1 gene.Thate08g13440
Malvaceae Hibiscus hamabo Siebold & Zucc. 1 nbisL1-mrna-10691
Nitrariaceae Nitraria sibirica 1 evm.TU.LG12.71
Plantaginaceae Plantago ovata 1 Pov_00025470
Plumbaginaceae Limonium bicolor 1 Lb8G36127
Poaceae Echinochloa crus-galli 4 AH05.3939, BH05.4029, CH04.1040, CH05.4227
Poaceae Eleusine coracana subsp. coracana 2 gene-QOZ80_2AG0147700, gene-QOZ80_2BG0203130
Poaceae Hordeum vulgare 1 HORVU.MOREX.r3.1HG0082020.1
Poaceae Lolium multiflorum 2 gene-QYE76_016085, gene-QYE76_016100
Poaceae Oryza coarctata 2 Oco13G014920, Oco14G015740
Poaceae Oryza sativa 1 LOC_Os07g46620.1
Poaceae Puccinellia tenuiflora 2 Pt_Chr0503976, Pt_Chr0504064
Poaceae Sporobolus alterniflorus 2 Chr09G018440, Chr13G002850
Poaceae Thinopyrum elongatum 1 Tel1E01G544900
Poaceae Triticum dicoccoides 2 gene_TRIDC1AG051720, gene_TRIDC1BG058960
Poaceae Triticum aestivum 3 TraesCS1A02G350600.1, TraesCS1B02G364900.2 ...
TraesCS1D02G353400.1
Poaceae Zea mays 1 Zm00001eb349300_P001
Poaceae Zoysia japonica 2 nbis-gene-40034, nbis-gene-8554
Poaceae Zoysia macrostachya 1 Zma_g17260
Portulacaceae Portulaca oleracea 2 evm.TU.LG18.771, evm.TU.LG20.1135
Posidoniaceae Posidonia oceanica 1 gene.Posoc04g11460
Rhizophoraceae Bruguiera sexangula 1 evm.TU.Scaffold_3_RagTag.7
Rhizophoraceae Carallia pectinifolia 2 nbisL1-mrna-139, nbisL1-mrna-153
Rhizophoraceae Ceriops tagal 1 nbisL1-mrna-10518
Rhizophoraceae Kandelia candel 1 evm.TU.utg000019l.340
Rhizophoraceae Kandelia obovata 2 Maker00001759, Maker00006803
Rhizophoraceae Rhizophora apiculata 1 nbisL1-mrna-6620
Rhizophoraceae Rhizophora mangle 1 nbisL1-mrna-2505
Salicaceae Populus euphratica 2 populus_peu09588, populus_peu24947
Solanaceae Lycium barbarum 2 gene-LOC132621860, gene-LOC132624855
Solanaceae Solanum chilense 1 SOLCI004561700
Solanaceae Solanum pennellii 1 gene-LOC107008855
Tamaricaceae Reaumuria soongarica 1 gene_11527
Tamaricaceae Tamarix chinensis 1 TC12G1766
Zosteraceae Zostera marina 1 Zosma06g01530.v3.1
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