Basic Information
Locus ID:
AH05.3909
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 56022868 | 56027634 | - | AH05.3909 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.84 | 59,569.10 Da | 69.04 | 60.58 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00024 | CD_CSD | 287 | 325 | 1.5443E-5 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 287 | 325 | 1.7E-6 | IPR023780 |
| Pfam | PF13639 | Ring finger domain | 216 | 259 | 1.4E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 216 | 265 | 3.53E-17 | - |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 235 | 329 | 1.76E-8 | IPR016197 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 201 | 270 | 3.7E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 217 | 258 | 5.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 217 | 259 | 12.592549 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 503 | 555 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 207 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61180.1 | RING/U-box superfamily protein. | 3.42E-7 |
| RefSeq | XP_025808119.1 | probable E3 ubiquitin-protein ligase RHY1A [Panicum hallii] | 1.63E-118 |
| TrEMBL | A0A3L6RBF0 | RING-type domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM06G32300 PE=4 SV=1 | 2.36E-118 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH05.3909, BH05.3935, CH05.4152 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0395530, gene-QOZ80_5BG0443860 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0439510.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_001362 |
| Poaceae | Oryza coarctata | 2 | Oco23G009380, Oco24G008940 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g39110.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G118900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0705446, Pt_Chr0705460 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr06G018460 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G148900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG010980, gene_TRIDC5BG012780 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G072600.1, TraesCS5B02G078400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb030010_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30421 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26027 |