Basic Information
Locus ID:
AH05.3894
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 55853670 | 55856872 | + | AH05.3894 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 68,562.27 Da | 39.94 | 88.22 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 21 | 124 | 1.4877E-44 | - |
| Pfam | PF03000 | NPH3 family | 211 | 469 | 8.3E-87 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 28 | 116 | 1.2E-6 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 22 | 117 | 3.61E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 16 | 119 | 3.0E-12 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 211 | 493 | 89.46064 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 97 | 11.047234 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 522 | 552 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 597 | 635 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 565 | 635 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 3.17E-188 |
| RefSeq | XP_025804806.1 | BTB/POZ domain-containing protein NPY4-like [Panicum hallii] | 0 |
| O80970 | Phototropic-responsive NPH3 family protein NPY2 OS=Arabidopsis thaliana OX=3702 GN=NPY2 PE=2 SV=1 | 3.05E-187 | |
| TrEMBL | A0A3L6RCG4 | BTB/POZ domain-containing protein NPY4-like OS=Panicum miliaceum OX=4540 GN=C2845_PM06G32420 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology