Basic Information
Locus ID:
AH05.388
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 3383498 | 3386061 | + | AH05.388 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.47 | 79,931.03 Da | 37.00 | 79.81 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 572 | 711 | 3.3E-22 | - |
| Pfam | PF13961 | Domain of unknown function (DUF4219) | 536 | 562 | 3.5E-10 | IPR025314 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 401 | 448 | 9.7E-7 | IPR032838 |
| Pfam | PF13768 | von Willebrand factor type A domain | 62 | 215 | 5.4E-18 | IPR002035 |
| SUPERFAMILY | SSF53300 | vWA-like | 61 | 231 | 1.83E-29 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 62 | 231 | 7.8E-37 | IPR036465 |
| SMART | SM00327 | VWA_4 | 60 | 232 | 9.1E-18 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 62 | 234 | 16.557423 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 488 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 488 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54780.1 | Zinc finger (C3HC4-type RING finger) family protein. | 1.24E-49 |
| RefSeq | XP_045084182.1 | uncharacterized protein LOC123493929 [Aegilops tauschii subsp. strangulata] | 1.24E-259 |
| TrEMBL | A0A453JGN1 | VWFA domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 2.8E-258 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 8 | AH05.388, AH05.865, AH05.867, BH01.4317, BH01.4319, BH05.448 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_9AG0670800, gene-QOZ80_9AG0675400 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_039716, gene-QYE76_058228, gene-QYE76_058230 ... |
| Poaceae | Oryza coarctata | 2 | Oco09G001520, Oco09G001530 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0605438, Pt_Chr0605787 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-18273, nbis-gene-53961, nbis-gene-53963 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17598 |