Basic Information
Locus ID:
AH05.387
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 3377508 | 3379055 | - | AH05.387 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.94 | 55,055.21 Da | 35.38 | 88.89 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00092 | von Willebrand factor type A domain | 48 | 203 | 1.9E-18 | IPR002035 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 390 | 460 | 4.8E-13 | IPR032838 |
| SUPERFAMILY | SSF53300 | vWA-like | 45 | 201 | 2.5E-26 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 48 | 215 | 4.7E-36 | IPR036465 |
| SMART | SM00327 | VWA_4 | 46 | 215 | 6.8E-20 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 48 | 218 | 16.41654 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 335 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 337 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08050.1 | Zinc finger (C3HC4-type RING finger) family protein. | 3.47E-36 |
| RefSeq | XP_039798718.1 | E3 ubiquitin-protein ligase WAV3-like [Panicum virgatum] | 3.75E-272 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 9.15E-15 | |
| TrEMBL | A0A8T0TZN3 | VWFA domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG054000 PE=4 SV=1 | 8.49E-271 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology