Basic Information
Locus ID:
AH05.3867
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 55520808 | 55526155 | - | AH05.3867 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 96,805.26 Da | 36.55 | 86.07 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00198 | vWFA | 207 | 356 | 8.2241E-5 | - |
| CDD | cd00198 | vWFA | 14 | 162 | 9.29874E-5 | - |
| Pfam | PF13768 | von Willebrand factor type A domain | 102 | 159 | 0.051 | IPR002035 |
| Pfam | PF13768 | von Willebrand factor type A domain | 302 | 353 | 0.044 | IPR002035 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 782 | 850 | 8.7E-10 | IPR032838 |
| Pfam | PF13768 | von Willebrand factor type A domain | 439 | 587 | 1.5E-16 | IPR002035 |
| SUPERFAMILY | SSF53300 | vWA-like | 436 | 607 | 8.49E-23 | IPR036465 |
| SUPERFAMILY | SSF53300 | vWA-like | 204 | 357 | 1.03E-5 | IPR036465 |
| SUPERFAMILY | SSF53300 | vWA-like | 11 | 161 | 2.63E-6 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 53 | 172 | 8.8E-6 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 238 | 368 | 1.9E-5 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 439 | 608 | 2.1E-32 | IPR036465 |
| SMART | SM00327 | VWA_4 | 206 | 379 | 1.7 | IPR002035 |
| SMART | SM00327 | VWA_4 | 437 | 611 | 1.1E-15 | IPR002035 |
| SMART | SM00327 | VWA_4 | 13 | 181 | 1.7 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 439 | 606 | 16.48698 | IPR002035 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 1.02E-32 |
| RefSeq | XP_039798718.1 | E3 ubiquitin-protein ligase WAV3-like [Panicum virgatum] | 7.31E-241 |
| TrEMBL | A0A8T0TZN3 | VWFA domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG054000 PE=4 SV=1 | 1.65E-239 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology