Basic Information
Locus ID:
AH05.386
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 3371201 | 3373642 | - | AH05.386 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.81 | 70,537.57 Da | 37.24 | 86.89 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14624 | VWA / Hh protein intein-like | 530 | 604 | 2.5E-7 | IPR032838 |
| Pfam | PF00092 | von Willebrand factor type A domain | 59 | 211 | 6.8E-15 | IPR002035 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 349 | 419 | 3.3E-7 | IPR032838 |
| SUPERFAMILY | SSF53300 | vWA-like | 56 | 217 | 7.7E-22 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 59 | 225 | 3.0E-28 | IPR036465 |
| SMART | SM00327 | VWA_4 | 57 | 225 | 3.5E-16 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 59 | 228 | 15.0077 | IPR002035 |
| Coils | Coil | Coil | 596 | 616 | - | - |
| Coils | Coil | Coil | 352 | 372 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 1.74E-26 |
| RefSeq | XP_039798713.1 | E3 ubiquitin-protein ligase WAV3-like [Panicum virgatum] | 2.06E-206 |
| TrEMBL | A0A8T0U401 | VWFA domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG054200 PE=4 SV=1 | 4.67E-205 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology