Basic Information
Locus ID:
AH05.3799
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH05 | 54739805 | 54744940 | - | AH05.3799 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 73,895.65 Da | 47.63 | 96.20 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 261 | 303 | 1.25516E-27 | - |
| Pfam | PF04564 | U-box domain | 257 | 327 | 9.0E-22 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 383 | 421 | 1.6E-9 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 424 | 462 | 7.1E-5 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 466 | 503 | 4.0E-6 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 244 | 332 | 4.8E-32 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 352 | 637 | 2.45E-50 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 256 | 330 | 4.9E-32 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 339 | 465 | 3.7E-26 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 31 | 123 | 1.0E-8 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 466 | 631 | 1.3E-23 | IPR011989 |
| SMART | SM00185 | arm_5 | 423 | 463 | 0.0048 | IPR000225 |
| SMART | SM00185 | arm_5 | 382 | 422 | 1.7E-5 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 260 | 323 | 6.3E-34 | IPR003613 |
| SMART | SM00185 | arm_5 | 546 | 586 | 190.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 464 | 504 | 3.4 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 393 | 435 | 13.0724 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 256 | 330 | 45.610195 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 642 | 677 | - | - |
| Coils | Coil | Coil | 129 | 149 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 1.29E-138 |
| RefSeq | XP_034586996.1 | protein spotted leaf 11-like [Setaria viridis] | 1.4E-303 |
| A2ZLU6 | Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2 | 3.98E-260 | |
| TrEMBL | A0A1E5VC14 | RING-type E3 ubiquitin transferase OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0016426 PE=4 SV=1 | 1.6000000000015E-312 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology